بررسی پایداری برخی ژن‌های مرجع در ارقام سبز و قرمز گیاه ریحان شیرین (Ocimum basilicum L.) تحت تنش‌های غیر زیستی

Ahmed AF, Attia FA, Liu Z, Li C, Wei J, Kang W (2019) Antioxidant activity and total phenolic content of essential oils and extracts of sweet basil (Ocimum basilicum L.) plants. Food Science and Human Wellness. 8 (3): 299-305. Andersen CL, Jensen JL, Ørntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer research. 64 (15): 5245-5250. Bustin SA (2000) Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. Journal of Molecular Endocrinology. 25 (2): 169-193. Cao J, Wang L, Lan H (2016) Validation of reference genes for quantitative RT-PCR normalization in Suaeda aralocaspica, an annual halophyte with heteromorphism and C4 pathway without Kranz anatomy. PeerJ. 4: e1697. Chervoneva I, Li Y, Schulz S, Croker S, Wilson C, Waldman SA, Hyslop T (2010) Selection of optimal reference genes for normalization in quantitative RT-PCR. BMC bioinformatics.11(1): 253. Delfin JC, Watanabe M, Tohge T (2019) Understanding the function and regulation of plant secondary metabolism through metabolomics approaches. Theoretical and Experimental Plant Physiology. 31 (1): 127-138. Dhama K, Sharun K, Gugjoo MB, Tiwari R, Alagawany M, Iqbal Yatoo M, Thakur P, Iqbal HM, Chaicumpa W, Michalak I (2021) A comprehensive review on chemical profile and pharmacological activities of Ocimum basilicum. Food Reviews International. 1-29. Ebrahimi A, Rashidi Monfared S, moradi sarabshelli A, heidari P (2018) Validation of some of Housekeeping Genes in Aeluropus littoralis under Salinity Stress. Journal of Crop Breeding. 10(25): 110-117. (In Persian). Fan C, Ma J, Guo Q, Li X, Wang H, Lu M (2013) Selection of reference genes for quantitative real-time PCR in bamboo (Phyllostachys edulis). PloS one. 8 (2): e56573. Forootan A, Sjöback R, Björkman J, Sjögreen B, Linz L, Kubista M (2017) Methods to determine limit of detection and limit of quantification in quantitative real-time PCR (qPCR). Biomolecular detection and quantification. 12: 1-6. Gachon C, Mingam A, Charrier B (2004) Real-time PCR: what relevance to plant studies? Journal of experimental botany. 55 (402): 1445-1454. Guo J, Huang Z, Sun J, Cui X, Liu Y (2021) Research Progress and Future Development Trends in Medicinal Plant Transcriptomics. Frontiers in plant science. 12. Gutierrez L, Mauriat M, Pelloux J, Bellini C, Van Wuytswinkel O (2008) Towards a systematic validation of references in real-time RT-PCR. The Plant Cell. 20 (7): 1734-1735. Jaiswal PS, Kaur N, Randhawa GS (2019) Identification of Reference Genes for qRT-PCR Gene Expression Studies during Seed Development and under Abiotic Stresses in Cyamopsis tetragonoloba. Crop Science. 59(1): 252-265. Joseph JT, Poolakkalody NJ, Shah JM (2018) Plant reference genes for development and stress response studies. Journal of biosciences. 43 (1): 173-187. Kiarash JG, Wilde HD, Amirmahani F, Moemeni MM, Zaboli M, Nazari M, Moosavi SS, Jamalvandi M (2018) Selection and validation of reference genes for normalization of qRT-PCR gene expression in wheat (Triticum durum L.) under drought and salt stresses. Journal of Genetics. 97(5): 1433-1444. Kozera B, Rapacz M (2013) Reference genes in real-time PCR. Journal of applied genetics. 54 (4): 391-406. Le DT, Aldrich DL, Valliyodan B, Watanabe Y, Van Ha C, Nishiyama R, Guttikonda SK, Quach TN, Gutierrez-Gonzalez JJ, Tran L-SP (2012) Evaluation of candidate reference genes for normalization of quantitative RT-PCR in soybean tissues under various abiotic stress conditions. PloS one. 7 (9): e46487. Li Y, Chen W, Wang Q, Wang N, Wu Y (2014) Assessment of reference genes for quantitative real-time PCR gene expression normalization in periwinkle during Wheat Blue Dwarf phytoplasma infection. Australasian Plant Pathology. 43 (4): 477-485. Liu Q, Qi X, Yan H, Huang L, Nie G, Zhang X (2018) Reference gene selection for quantitative real-time reverse-transcriptase PCR in annual ryegrass (Lolium multiflorum) subjected to various abiotic stresses. Molecules. 23 (1): 172. Ma Q, Hao S, Chen X, Li X (2016) Validation of reliability for reference genes under various abiotic stresses in tea plant. Russian Journal of Plant Physiology. 63 (3): 423-432. Marum L, Miguel A, Ricardo CP, Miguel C (2012) Reference gene selection for quantitative real-time PCR normalization in Quercus suber. PloS one. 7 (4): e35113. Nicot N, Hausman J-F, Hoffmann L, Evers D (2005) Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. Journal of experimental botany. 56 (421): 2907-2914. Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper–Excel-based tool using pair-wise correlations. Biotechnology letters. 26 (6): 509-515. Pu Q, Li Z, Nie G, Zhou J, Liu L, Peng Y (2020) Selection and validation of reference genes for quantitative real-time PCR in white clover (Trifolium repens L.) involved in five abiotic stresses. Plants. 9 (8): 996. Rai A, Yamazaki M, Saito K (2019) A new era in plant functional genomics. Current Opinion in Systems Biology. 15: 58-67. Reddy DS, Bhatnagar-Mathur P, Reddy PS, Sri Cindhuri K, Sivaji Ganesh A, Sharma KK (2016) Identification and validation of reference genes and their impact on normalized gene expression studies across cultivated and wild cicer species. PloS one. 11 (2): e0148451. Rezaie R, Mandoulakani BA, Fattahi M (2020) Cold stress changes antioxidant defense system, phenylpropanoid contents and expression of genes involved in their biosynthesis in Ocimum basilicum L. Scientific reports. 10 (1): 1-10. Scholtz JJ, Visser B (2013) Reference gene selection for qPCR gene expression analysis of rust-infected wheat. Physiological and molecular plant pathology. 81: 22-25. Senji BM, Mandoulakani BA (2018) The impact of cold stress on genes expression pattern of mono-and sesquiterpene biosynthesis and their contents in Ocimum basilicum L. Phytochemistry. 156: 250-256. Shahrajabian MH, Sun W, Cheng Q (2020) Chemical components and pharmacological benefits of Basil (Ocimum basilicum): a review. International Journal of Food Properties. 23 (1): 1961-1970. Tian C, Jiang Q, Wang F, Wang G-L, Xu Z-S, Xiong A-S (2015) Selection of suitable reference genes for qPCR normalization under abiotic stresses and hormone stimuli in carrot leaves. PLoS One. 10 (2): e0117569. Tong Z, Gao Z, Wang F, Zhou J, Zhang Z (2009) Selection of reliable reference genes for gene expression studies in peach using real-time PCR. BMC molecular biology. 10 (1): 71. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome biology. 3 (7): research0034. 0031. Wang Y, Dai M, Cai D, Shi Z (2019) Screening for quantitative real-time PCR reference genes with high stable expression using the mRNA-sequencing data for pear. Tree Genetics & Genomes. 15 (4): 54. Zhang Y, Li D, Sun B (2015) Do housekeeping genes exist? PLoS One. 10 (5).