سازوکارهای تکاملی زمینه‌سازِ تنوع متابولیت‌های ثانویه سه گونه براسیکا با استفاده ازتحلیل مقایسه‌ای این‌سیلیکو ژن‌های مرتبط

Bassel, G. W., Glaab, E., Marquez, J. & Bacardit, J. (2011). Functional Network Construction in Arabidopsis Using Rule-Based Machine Learning on Large-Scale Data Sets. Plant Cell, 23 (9), 3101-3116. Bisht, N.C., Gupta, V., Ramchiary, N., Sodhi, Y.S., Mukhopadhyay, A., Arumugam, N., Pental, D. & Pradhan, A. (2009). Fine mapping of loci involved with glucosinolate biosynthesis in oilseed mustard (Brassica juncea) using genomic information from allied species. Theoretical and Applied Genetics, 118 (3), 413-421. FAO (2020). Oilseeds oils and meals to contribute to world food security. America, New York. Friedt, W. & Snowdon, R. (2009). Oilseed rape in Oil Crops. New York, Vollmann press. Gigolashvili, T., Engqvist, M., Yatusevich, R., Muller, C. & Flugge, U. I. (2007). The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana. Plant Journal, 50 (5), 886-901. Harper, A.L., Trick, M., Higgins, J., Fraser, F., Clissold, L., Wells, R., Werner, P. & Bancroft, I. (2012). Associative transcriptomics of traits in the polyploid crop species Brassica napus. Nature Biotechnology, 30, 798-802. Hayes, J.D., Kelleher, M.O. & Eggleston, I.M. (2008). The cancer chemopreventive actions of phytochemicals derived from glucosinolates. European Journal of Nutrition, 47 (2), 73-88. Heidary, P., Maleki Zanjani, B. & Heidary, S. (2012). A study of gene expression and functional genomics of wheat, rice, cotton and festuca plants under drought stress by analyzing expressed sequence tags (EST). Modern Genetics Journal, 7(2 (29)), 129-140. (in Persian). Heidari, Sh., Azizinezhad, R., Haghparast, R. & Heidari, P. (2019). Evaluation of the association among yield and contributing characters through path coefficient analysis in advanced lines of durum wheat under diverse conditions. Journal of Animal and Plant Sciences, 29 (5), 1325-1335. Heidari, Sh., Heidari, P., Azizinezhad, R., Etminan, A. & Khosroshahli, M. (2020). Assessment of variability heritability and genetic advance for agro-morphological and some in-vitro related-traits in durum wheat. Bulgarian Journal of Agricultural Science, 26(1), 120-127. Ke, Y. Z., Wu, Y. W. & Zhou, H. J. (2020). Genome-wide survey of the bHLH super gene family in Brassica napus. BMC Plant Biology, 20, 115. Kliebenstein, D. J., Kroymann, J., Brown, P., Figuth, A., Pedersen, D., Gershenzon, J. & Mitchell-Olds, T. (2001). Genetic control of natural variation in Arabidopsis glucosinolate accumulation. Plant Physiology, 126(2), 811-825. Koonin, E. V., Mushegian, A. R. & Bork, P. (1996). Non-orthologous gene displacement. Trends in Genetics, 12(9), 334-336. Kumar, R., Lee, S. G., Augustine, R., Reichelt, M., Vassão, D. G., Palavalli, M. H., Allen, A., Gershenzon, J., Jez, J. M. & Bisht, N. C. (2019). Molecular Basis of the Evolution of Methylthioalkylmalate Synthase and the Diversity of Methionine-Derived Glucosinolates. The Plant Cell, 31(7), 1633-1647. Li, X., Chen, L., Hong, M., Zhang, Y., Zu, F., Yi, B., Shen, J., Tu, J. & Fu, T. (2012). A large insertion in bHLH transcription factor BrTT8 resulting in yellow seed coat in Brassica rapa. PloS One, 7(9), e44145. Lysak, M. A., Koch, M. A., Pecinka, A. & Schubert, I. (2005). Chromosome triplication found across the tribe Brassiceae. Genome Research, 15 (4), 516-525. Mahony, S. & Benos, P. V. (2007). STAMP: a web tool for exploring DNA-binding motif similarities. Nucleic Acids Research, 35, W253-W258. Masoudi Nejad, A., Tonomura, K., Kawashima, Sh., Moriya, Y., Suzuki, M., Itoh, M., Kanehisa, M., Endo, T. & Goto, S. (2006). EGassembler: online bioinformatics service for large-scale processing clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Research, 34, 459-462. Mcginnis, S. & Madden, T. L. (2004). BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Research, 32: 20-25. Neerincx, P. & Leunissen, J. (2005). Evolution of web service in bioinformatics. Briefings in Bioinformatics, 6 (2), 178-188. Nugroho, A.B., Han, N. & Pervitasari, A.N. (2020). Differential expression of major genes involved in the biosynthesis of aliphatic glucosinolates in intergeneric Baemoochae (Brassicaceae) and its parents during development. Plant Molecular Biology, 102, 569. Panjabi, P., Jagannath, A., Bisht, N. C., Padmaja, K. L., Sharma, S., Gupta, V., Pradhan, A. K. & Pental, D. (2008). Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. BMC Genomics, 9, 113. Pérez-Bercoff, A., Makino, T. & McLysaght, A. (2010). Duplicability of self-interacting human genes. BMC Evolutionary Biology, 28(10), 160. Ramsak, Z., Baebler, S., Rotter, A., Korbar, M., Mozetic, I., Usadel, B. & Gruden, K. (2014). GoMapMan: integration consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Research, 42(1), D1167-D1175. Ren, Y., Zhang, N., Li, R., Ma, X. & Zhang, L. (2021). Comparative transcriptome and flavonoids components analysis reveal the structural genes responsible for the yellow seed coat color of Brassica rapa L. PeerJ, 9, e10770. Romualdi, C., Bortoluzzi, S. & Danieli, G. A. (2003). IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. Physiological Genomics, 12, 159-162. Sharma, M., Mukhopadhyay, A., Gupta, V., Pental, D. & Pradhan, A. K. (2016). BjuB.CYP79F1 Regulates Synthesis of Propyl Fraction of Aliphatic Glucosinolates in Oilseed Mustard Brassica juncea: Functional Validation through Genetic and Transgenic Approaches. PloS One, 11(2), e0150060. Singh, P., Arf, Y., Bajuz, A. & Hayt, S. (2021). The role of quercetin in plant. Plant Physiology, 166, 10-19 Sinha, S. & Tompa, M. (2003). YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Research, 31(13), 3586-3588. Sønderby, I. E., Burow, M., Rowe, H. C., Kliebenstein, D. J. & Halkier, B. A. (2010). A Complex Interplay of Three R2R3 MYB Transcription Factors Determines the Profile of Aliphatic Glucosinolates in Arabidopsis. Plant Physiology, 153 (1), 348-363. Town, C.D., Cheung, F., Maiti, R., Crabtree, J., Haas, B. J., Wortman, J. R., Hine, E. E., Althoff, R., Arbogast, T. S., Tallon, L. J., Vigouroux, M. T., Rick, M. & Bancroft, I. (2006). Comparative Genomics of Brassica oleracea and Arabidopsis thaliana Reveal Gene Loss, Fragmentation, and Dispersal after Polyploidy. The Plant Cell, 18(6), 1348-1359. Udall, J. A., Swanson, J. M., Nettleton, D., Percifield, R. J. & Wendel, J. F. (2006). A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics, 173, 1823-1827. Vassilev, D. J., Leunissen, A., Atanassov, A., Nenov, A. & G, Dimov. (2005). Application of bioinformatics in plant breeding. Biotechnology and Biotechnological Equipment, 19, 139-152. Wood, T., Takebayashi, N., Barker, M., Mayrose, I., Greenspoon, P. & Rieseberg, L.H. (2009). The frequency of polyploid speciation in vascular plants. Proceedings of the National Academy of Sciences, 106 (33), 13875-13879. Yonekura, K. & Saito, K. (2009). Functional genomics for plant natural product biosynthesis. Natural Product Reports, 26 (11), 1466-1487. Zang, Y. X., Kim, H. U. & Kim, J. A. (2009). Genome-wide identification of glucosinolate synthesis genes in Brassica rapa. The FEBS Journal, 276 (13), 3559-3574.